A class for connections to h5Seurat files

A class for connections to h5Seurat files

A class for connections to h5Seurat files

Format

An R6Class object

See also

H5File

Super classes

hdf5r::H5RefClass -> hdf5r::H5File -> SeuratDisk::scdisk -> h5Seurat

Methods

Public methods

• h5Seurat$index()

• h5Seurat$set.version()

• h5Seurat$version()

Inherited methods

• hdf5r::H5RefClass$close()

• hdf5r::H5RefClass$dec_ref()

• hdf5r::H5RefClass$get_file_id()

• hdf5r::H5RefClass$get_obj_type()

• hdf5r::H5RefClass$get_ref()

• hdf5r::H5RefClass$inc_ref()

• hdf5r::H5RefClass$methods()

• hdf5r::H5File$attr_delete()

• hdf5r::H5File$attr_delete_by_idx()

• hdf5r::H5File$attr_delete_by_name()

• hdf5r::H5File$attr_exists()

• hdf5r::H5File$attr_exists_by_name()

• hdf5r::H5File$attr_get_number()

• hdf5r::H5File$attr_info_by_idx()

• hdf5r::H5File$attr_info_by_name()

• hdf5r::H5File$attr_name_by_idx()

• hdf5r::H5File$attr_open()

• hdf5r::H5File$attr_open_by_idx()

• hdf5r::H5File$attr_open_by_name()

• hdf5r::H5File$attr_rename()

• hdf5r::H5File$attr_rename_by_name()

• hdf5r::H5File$close_all()

• hdf5r::H5File$commit()

• hdf5r::H5File$create_attr()

• hdf5r::H5File$create_attr_by_name()

• hdf5r::H5File$create_dataset()

• hdf5r::H5File$create_group()

• hdf5r::H5File$create_reference()

• hdf5r::H5File$exists()

• hdf5r::H5File$file_info()

• hdf5r::H5File$flush()

• hdf5r::H5File$get_filename()

• hdf5r::H5File$get_filesize()

• hdf5r::H5File$get_intent()

• hdf5r::H5File$get_obj_count()

• hdf5r::H5File$get_obj_ids()

• hdf5r::H5File$get_obj_name()

• hdf5r::H5File$group_info()

• hdf5r::H5File$group_info_by_idx()

• hdf5r::H5File$group_info_by_name()

• hdf5r::H5File$link()

• hdf5r::H5File$link_copy_from()

• hdf5r::H5File$link_copy_to()

• hdf5r::H5File$link_create_external()

• hdf5r::H5File$link_create_hard()

• hdf5r::H5File$link_create_soft()

• hdf5r::H5File$link_delete()

• hdf5r::H5File$link_delete_by_idx()

• hdf5r::H5File$link_exists()

• hdf5r::H5File$link_info()

• hdf5r::H5File$link_info_by_idx()

• hdf5r::H5File$link_move_from()

• hdf5r::H5File$link_move_to()

• hdf5r::H5File$link_name_by_idx()

• hdf5r::H5File$link_value()

• hdf5r::H5File$link_value_by_idx()

• hdf5r::H5File$ls()

• hdf5r::H5File$mount()

• hdf5r::H5File$obj_copy_from()

• hdf5r::H5File$obj_copy_to()

• hdf5r::H5File$obj_info()

• hdf5r::H5File$obj_info_by_idx()

• hdf5r::H5File$obj_info_by_name()

• hdf5r::H5File$open()

• hdf5r::H5File$open_by_idx()

• hdf5r::H5File$path_valid()

• hdf5r::H5File$print()

• hdf5r::H5File$unmount()

• SeuratDisk::scdisk$chunk.points()

• SeuratDisk::scdisk$finalizer()

• SeuratDisk::scdisk$initialize()

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Method index()

Get the index for this h5Seurat file

Usage

h5Seurat$index()

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Method set.version()

Set the version attribute

Usage

h5Seurat$set.version(version)

Arguments

version

A version number matching the regex ^\d+(\.\d+){2}(\.9\d{3})?$

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Method version()

Get the version attribute

Usage

h5Seurat$version()